在本文中,使用聚类和阈值算法实现了DIBA数据集细菌属和物种的半自动注释。深度学习模型经过训练,以实现细菌物种的语义分割和分类。分类精度达到95%。深度学习模型在生物医学图像处理中发现了巨大的应用。从革兰氏阴性微观图像中自动分割细菌对于诊断呼吸道和尿路感染,检测癌症等至关重要。深度学习将有助于生物学家在更少的时间内获得可靠的结果。此外,可以减少许多人类干预措施。这项工作可能有助于检测尿液涂片图像,痰液涂片图像等的细菌,以诊断尿路感染,结核病,肺炎等。
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Three main points: 1. Data Science (DS) will be increasingly important to heliophysics; 2. Methods of heliophysics science discovery will continually evolve, requiring the use of learning technologies [e.g., machine learning (ML)] that are applied rigorously and that are capable of supporting discovery; and 3. To grow with the pace of data, technology, and workforce changes, heliophysics requires a new approach to the representation of knowledge.
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In 2019 Kerdels and Peters proposed a grid cell model (GCM) based on a Differential Growing Neural Gas (DGNG) network architecture as a computationally efficient way to model an Autoassociative Memory Cell (AMC) \cite{Kerdels_Peters_2019}. An important feature of the DGNG architecture with respect to possible applications in the field of computational neuroscience is its \textit{capacity} refering to its capability to process and uniquely distinguish input signals and therefore obtain a valid representation of the input space. This study evaluates the capacity of a two layered DGNG grid cell model on the Fashion-MNIST dataset. The focus on the study lies on the variation of layer sizes to improve the understanding of capacity properties in relation to network parameters as well as its scaling properties. Additionally, parameter discussions and a plausability check with a pixel/segment variation method are provided. It is concluded, that the DGNG model is able to obtain a meaningful and plausible representation of the input space and to cope with the complexity of the Fashion-MNIST dataset even at moderate layer sizes.
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We describe a Physics-Informed Neural Network (PINN) that simulates the flow induced by the astronomical tide in a synthetic port channel, with dimensions based on the Santos - S\~ao Vicente - Bertioga Estuarine System. PINN models aim to combine the knowledge of physical systems and data-driven machine learning models. This is done by training a neural network to minimize the residuals of the governing equations in sample points. In this work, our flow is governed by the Navier-Stokes equations with some approximations. There are two main novelties in this paper. First, we design our model to assume that the flow is periodic in time, which is not feasible in conventional simulation methods. Second, we evaluate the benefit of resampling the function evaluation points during training, which has a near zero computational cost and has been verified to improve the final model, especially for small batch sizes. Finally, we discuss some limitations of the approximations used in the Navier-Stokes equations regarding the modeling of turbulence and how it interacts with PINNs.
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Video segmentation consists of a frame-by-frame selection process of meaningful areas related to foreground moving objects. Some applications include traffic monitoring, human tracking, action recognition, efficient video surveillance, and anomaly detection. In these applications, it is not rare to face challenges such as abrupt changes in weather conditions, illumination issues, shadows, subtle dynamic background motions, and also camouflage effects. In this work, we address such shortcomings by proposing a novel deep learning video segmentation approach that incorporates residual information into the foreground detection learning process. The main goal is to provide a method capable of generating an accurate foreground detection given a grayscale video. Experiments conducted on the Change Detection 2014 and on the private dataset PetrobrasROUTES from Petrobras support the effectiveness of the proposed approach concerning some state-of-the-art video segmentation techniques, with overall F-measures of $\mathbf{0.9535}$ and $\mathbf{0.9636}$ in the Change Detection 2014 and PetrobrasROUTES datasets, respectively. Such a result places the proposed technique amongst the top 3 state-of-the-art video segmentation methods, besides comprising approximately seven times less parameters than its top one counterpart.
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Scene change detection is an image processing problem related to partitioning pixels of a digital image into foreground and background regions. Mostly, visual knowledge-based computer intelligent systems, like traffic monitoring, video surveillance, and anomaly detection, need to use change detection techniques. Amongst the most prominent detection methods, there are the learning-based ones, which besides sharing similar training and testing protocols, differ from each other in terms of their architecture design strategies. Such architecture design directly impacts on the quality of the detection results, and also in the device resources capacity, like memory. In this work, we propose a novel Multiscale Cascade Residual Convolutional Neural Network that integrates multiscale processing strategy through a Residual Processing Module, with a Segmentation Convolutional Neural Network. Experiments conducted on two different datasets support the effectiveness of the proposed approach, achieving average overall $\boldsymbol{F\text{-}measure}$ results of $\boldsymbol{0.9622}$ and $\boldsymbol{0.9664}$ over Change Detection 2014 and PetrobrasROUTES datasets respectively, besides comprising approximately eight times fewer parameters. Such obtained results place the proposed technique amongst the top four state-of-the-art scene change detection methods.
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Research on remote sensing image classification significantly impacts essential human routine tasks such as urban planning and agriculture. Nowadays, the rapid advance in technology and the availability of many high-quality remote sensing images create a demand for reliable automation methods. The current paper proposes two novel deep learning-based architectures for image classification purposes, i.e., the Discriminant Deep Image Prior Network and the Discriminant Deep Image Prior Network+, which combine Deep Image Prior and Triplet Networks learning strategies. Experiments conducted over three well-known public remote sensing image datasets achieved state-of-the-art results, evidencing the effectiveness of using deep image priors for remote sensing image classification.
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Early recognition of clinical deterioration (CD) has vital importance in patients' survival from exacerbation or death. Electronic health records (EHRs) data have been widely employed in Early Warning Scores (EWS) to measure CD risk in hospitalized patients. Recently, EHRs data have been utilized in Machine Learning (ML) models to predict mortality and CD. The ML models have shown superior performance in CD prediction compared to EWS. Since EHRs data are structured and tabular, conventional ML models are generally applied to them, and less effort is put into evaluating the artificial neural network's performance on EHRs data. Thus, in this article, an extremely boosted neural network (XBNet) is used to predict CD, and its performance is compared to eXtreme Gradient Boosting (XGBoost) and random forest (RF) models. For this purpose, 103,105 samples from thirteen Brazilian hospitals are used to generate the models. Moreover, the principal component analysis (PCA) is employed to verify whether it can improve the adopted models' performance. The performance of ML models and Modified Early Warning Score (MEWS), an EWS candidate, are evaluated in CD prediction regarding the accuracy, precision, recall, F1-score, and geometric mean (G-mean) metrics in a 10-fold cross-validation approach. According to the experiments, the XGBoost model obtained the best results in predicting CD among Brazilian hospitals' data.
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With water quality management processes, identifying and interpreting relationships between features, such as location and weather variable tuples, and water quality variables, such as levels of bacteria, is key to gaining insights and identifying areas where interventions should be made. There is a need for a search process to identify the locations and types of phenomena that are influencing water quality and a need to explain why the quality is being affected and which factors are most relevant. This paper addresses both of these issues through the development of a process for collecting data for features that represent a variety of variables over a spatial region, which are used for training and inference, and analysing the performance of the features using the model and Shapley values. Shapley values originated in cooperative game theory and can be used to aid in the interpretation of machine learning results. Evaluations are performed using several machine learning algorithms and water quality data from the Dublin Grand Canal basin.
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The performances of braking control systems for robotic platforms, e.g., assisted and autonomous vehicles, airplanes and drones, are deeply influenced by the road-tire friction experienced during the maneuver. Therefore, the availability of accurate estimation algorithms is of major importance in the development of advanced control schemes. The focus of this paper is on the estimation problem. In particular, a novel estimation algorithm is proposed, based on a multi-layer neural network. The training is based on a synthetic data set, derived from a widely used friction model. The open loop performances of the proposed algorithm are evaluated in a number of simulated scenarios. Moreover, different control schemes are used to test the closed loop scenario, where the estimated optimal slip is used as the set-point. The experimental results and the comparison with a model based baseline show that the proposed approach can provide an effective best slip estimation.
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